J3_9NDP_028

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGG*UAAGAG*CAUUA

Length

14 nucleotides

Bulged bases

9NDP|1|K|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|U|682
9NDP|1|K|G|683
9NDP|1|K|G|684
*
9NDP|1|K|U|918
9NDP|1|K|A|919
9NDP|1|K|A|920
9NDP|1|K|G|921
9NDP|1|K|A|922
9NDP|1|K|G|923
*
9NDP|1|K|C|1019
9NDP|1|K|A|1020
9NDP|1|K|U|1021
9NDP|1|K|U|1022
9NDP|1|K|A|1023

Current chains

Chain K

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S7

Chain EE

Ribosomal protein S11

Chain JJ

40S ribosomal protein S27

Chain QQ

Ribosomal protein S13

Chain TT

Ribosomal protein S15a

Chain VV

uS12