J3_9NDP_032

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|1218
9NDP|1|K|C|1219
9NDP|1|K|A|1220
9NDP|1|K|G|1221
*
9NDP|1|K|C|1645
9NDP|1|K|C|1646
9NDP|1|K|A|1647
9NDP|1|K|G|1648
9NDP|1|K|U|1649
9NDP|1|K|A|1650
9NDP|1|K|A|1651
*
9NDP|1|K|U|1673
9NDP|1|K|G|1674
9NDP|1|K|A|1675
9NDP|1|K|U|1676
9NDP|1|K|U|1677
9NDP|1|K|A|1678
9NDP|1|K|A|1679
9NDP|1|K|G|1680

Current chains

Chain K

18S rRNA

Nearby chains

Chain FF

Ribosomal protein S28

Chain UU

uS9

Chain y

Ribosomal protein S5