J3_9NDP_036

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|U|1340
9NDP|1|K|C|1341
9NDP|1|K|U|1342
9NDP|1|K|U|1343
9NDP|1|K|A|1344
9NDP|1|K|G|1345
*
9NDP|1|K|C|1384
9NDP|1|K|G|1385
9NDP|1|K|A|1386
9NDP|1|K|G|1387
9NDP|1|K|A|1388
9NDP|1|K|C|1389
*
9NDP|1|K|G|1481
9NDP|1|K|C|1482
9NDP|1|K|A|1483
9NDP|1|K|A|1484
9NDP|1|K|U|1485
9NDP|1|K|A|1486

Current chains

Chain K

18S rRNA

Nearby chains

Chain 9

eS29

Chain GG

uS10

Chain KK

eS17

Chain UU

uS9

Chain v

Small ribosomal subunit protein uS5

Chain w

Ribosomal protein S3