J3_9NDP_039

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9NDP|1|K|U|1535, 9NDP|1|K|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|C|1532
9NDP|1|K|A|1533
9NDP|1|K|C|1534
9NDP|1|K|U|1535
9NDP|1|K|G|1536
*
9NDP|1|K|C|1597
9NDP|1|K|G|1598
9NDP|1|K|U|1599
9NDP|1|K|G|1600
9NDP|1|K|A|1601
9NDP|1|K|U|1602
9NDP|1|K|G|1603
9NDP|1|K|G|1604
*
9NDP|1|K|C|1635
9NDP|1|K|G|1636
9NDP|1|K|A|1637
9NDP|1|K|G|1638

Current chains

Chain K

18S rRNA

Nearby chains

Chain II

uS13

Chain OO

eS25

Chain PP

eS19

Chain y

Ribosomal protein S5