J3_9NJF_009

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9NJF|1|R1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_009 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1123

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NJF|1|R1|C|1298
9NJF|1|R1|G|1299
9NJF|1|R1|G|1300
9NJF|1|R1|A|1301
9NJF|1|R1|A|1302
9NJF|1|R1|G|1303
*
9NJF|1|R1|C|1625
9NJF|1|R1|A|1626
9NJF|1|R1|G|1627
*
9NJF|1|R1|C|1639
9NJF|1|R1|A|1640
9NJF|1|R1|A|1641
9NJF|1|R1|G|1642

Current chains

Chain R1

23S ribosomal RNA

Nearby chains