J3_9NJF_023
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NJF_023 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.1156
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NJF|1|R3|C|586
9NJF|1|R3|G|587
9NJF|1|R3|G|588
*
9NJF|1|R3|C|651
9NJF|1|R3|U|652
9NJF|1|R3|U|653
9NJF|1|R3|G|654
9NJF|1|R3|A|655
*
9NJF|1|R3|U|751
9NJF|1|R3|G|752
9NJF|1|R3|A|753
9NJF|1|R3|C|754
9NJF|1|R3|G|755
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sh
- 30S ribosomal protein S8
- Chain sl
- Small ribosomal subunit protein uS12
- Chain so
- Small ribosomal subunit protein uS15
- Chain sq
- Small ribosomal subunit protein uS17
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