J3_9NJF_025

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NJF|1|R3|U|871, 9NJF|1|R3|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJF_025 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.085

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NJF|1|R3|C|826
9NJF|1|R3|U|827
9NJF|1|R3|U|828
9NJF|1|R3|G|829
*
9NJF|1|R3|C|857
9NJF|1|R3|G|858
9NJF|1|R3|G|859
9NJF|1|R3|A|860
9NJF|1|R3|G|861
*
9NJF|1|R3|C|868
9NJF|1|R3|G|869
9NJF|1|R3|U|870
9NJF|1|R3|U|871
9NJF|1|R3|A|872
9NJF|1|R3|A|873
9NJF|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21