3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9NJV|1|R1|U|34, 9NJV|1|R1|U|448, 9NJV|1|R1|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9NJV_002 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0892
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9NJV|1|R1|C|32
9NJV|1|R1|C|33
9NJV|1|R1|U|34
9NJV|1|R1|G|35
*
9NJV|1|R1|C|445
9NJV|1|R1|G|446
9NJV|1|R1|A|447
9NJV|1|R1|U|448
9NJV|1|R1|A|449
9NJV|1|R1|G|450
9NJV|1|R1|U|451
9NJV|1|R1|G|452
9NJV|1|R1|A|453
9NJV|1|R1|A|454
9NJV|1|R1|C|455
9NJV|1|R1|C|456
9NJV|1|R1|A|457
9NJV|1|R1|G|458
9NJV|1|R1|U|459
9NJV|1|R1|A|460
9NJV|1|R1|C|461
*
9NJV|1|R1|G|468
9NJV|1|R1|G|469
9NJV|1|R1|A|470
9NJV|1|R1|A|471
9NJV|1|R1|A|472
9NJV|1|R1|G|473

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 20
Large ribosomal subunit protein bL20
Chain 23
Large ribosomal subunit protein uL23
Chain 34
50S ribosomal protein L34
Chain 4
Large ribosomal subunit protein uL4

Coloring options:


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