J3_9NJV_004

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*CGCGAUACAG*CGUACA

Length

22 nucleotides

Bulged bases

9NJV|1|R1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_004 not in the Motif Atlas

Geometric match to J3_4V9F_015

Geometric discrepancy: 0.1726

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

9NJV|1|R1|U|296
9NJV|1|R1|G|297
9NJV|1|R1|G|298
9NJV|1|R1|A|299
9NJV|1|R1|A|300
9NJV|1|R1|G|301
*
9NJV|1|R1|C|316
9NJV|1|R1|G|317
9NJV|1|R1|C|318
9NJV|1|R1|G|319
9NJV|1|R1|A|320
9NJV|1|R1|U|321
9NJV|1|R1|A|322
9NJV|1|R1|C|323
9NJV|1|R1|A|324
9NJV|1|R1|G|325
*
9NJV|1|R1|C|337
9NJV|1|R1|G|338
9NJV|1|R1|U|339
9NJV|1|R1|A|340
9NJV|1|R1|C|341
9NJV|1|R1|A|342

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 24

Large ribosomal subunit protein uL24

Chain 4

Large ribosomal subunit protein uL4