J3_9NJV_008

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9NJV|1|R1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_008 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1163

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9NJV|1|R1|C|1306
9NJV|1|R1|A|1307
9NJV|1|R1|A|1308
9NJV|1|R1|G|1309
*
9NJV|1|R1|C|1605
9NJV|1|R1|C|1606
9NJV|1|R1|C|1607
9NJV|1|R1|A|1608
9NJV|1|R1|A|1609
9NJV|1|R1|A|1610
9NJV|1|R1|C|1611
*
9NJV|1|R1|G|1620
9NJV|1|R1|U|1621
9NJV|1|R1|G|1622

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34