3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9NJV_010 not in the Motif Atlas
Homologous match to J3_7A0S_019
Geometric discrepancy: 0.1047
The information below is about J3_7A0S_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9NJV|1|R1|G|1424
9NJV|1|R1|G|1425
9NJV|1|R1|G|1426
9NJV|1|R1|A|1427
9NJV|1|R1|C|1428
9NJV|1|R1|G|1429
*
9NJV|1|R1|C|1564
9NJV|1|R1|C|1565
*
9NJV|1|R1|G|1568
9NJV|1|R1|A|1569
9NJV|1|R1|A|1570
9NJV|1|R1|A|1571
9NJV|1|R1|A|1572
9NJV|1|R1|G|1573
9NJV|1|R1|C|1574

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L2

Coloring options:


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