J3_9NJV_031

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NJV_031 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.344

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9NJV|1|R3|U|1073
9NJV|1|R3|G|1074
*
9NJV|1|R3|U|1083
9NJV|1|R3|G|1084
9NJV|1|R3|U|1085
9NJV|1|R3|U|1086
9NJV|1|R3|G|1087
*
9NJV|1|R3|C|1098
9NJV|1|R3|G|1099
9NJV|1|R3|C|1100
9NJV|1|R3|A|1101
9NJV|1|R3|A|1102

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain se

Small ribosomal subunit protein uS5

Chain su

Small ribosomal subunit protein bS21