J3_9NKL_024

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NKL|1|R3|U|871, 9NKL|1|R3|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_024 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1118

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NKL|1|R3|C|826
9NKL|1|R3|U|827
9NKL|1|R3|U|828
9NKL|1|R3|G|829
*
9NKL|1|R3|C|857
9NKL|1|R3|G|858
9NKL|1|R3|G|859
9NKL|1|R3|A|860
9NKL|1|R3|G|861
*
9NKL|1|R3|C|868
9NKL|1|R3|G|869
9NKL|1|R3|U|870
9NKL|1|R3|U|871
9NKL|1|R3|A|872
9NKL|1|R3|A|873
9NKL|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21