J3_9NKL_035

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9NKL|1|R3|U|1240, 9NKL|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NKL_035 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2457

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9NKL|1|R3|C|1237
9NKL|1|R3|A|1238
9NKL|1|R3|A|1239
9NKL|1|R3|U|1240
9NKL|1|R3|G|1241
*
9NKL|1|R3|C|1296
9NKL|1|R3|G|1297
9NKL|1|R3|U|1298
9NKL|1|R3|A|1299
9NKL|1|R3|G|1300
9NKL|1|R3|U|1301
9NKL|1|R3|C|1302
9NKL|1|R3|C|1303
*
9NKL|1|R3|G|1334
9NKL|1|R3|U|1335
9NKL|1|R3|C|1336
9NKL|1|R3|G|1337

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sg

30S ribosomal protein S7

Chain sm

30S ribosomal protein S13