J3_9NL5_021

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9NL5|1|R3|C|48, 9NL5|1|R3|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL5_021 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0725

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9NL5|1|R3|G|46
9NL5|1|R3|C|47
9NL5|1|R3|C|48
9NL5|1|R3|U|49
9NL5|1|R3|A|50
9NL5|1|R3|A|51
9NL5|1|R3|C|52
*
9NL5|1|R3|G|359
9NL5|1|R3|G|360
9NL5|1|R3|G|361
9NL5|1|R3|G|362
9NL5|1|R3|A|363
9NL5|1|R3|A|364
9NL5|1|R3|U|365
9NL5|1|R3|A|366
9NL5|1|R3|U|367
*
9NL5|1|R3|A|393
9NL5|1|R3|G|394
9NL5|1|R3|C|395

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16