J3_9NL5_027

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL5_027 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0832

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NL5|1|R3|U|943
9NL5|1|R3|G|944
9NL5|1|R3|G|945
9NL5|1|R3|A|946
*
9NL5|1|R3|U|1235
9NL5|1|R3|A|1236
9NL5|1|R3|C|1237
*
9NL5|1|R3|G|1337
9NL5|1|R3|G|1338
9NL5|1|R3|A|1339
9NL5|1|R3|A|1340

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain si

Small ribosomal subunit protein uS9

Chain sm

Small ribosomal subunit protein uS13