J3_9NL6_023

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NL6|1|R3|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL6_023 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0708

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NL6|1|R3|C|826
9NL6|1|R3|U|827
9NL6|1|R3|U|828
9NL6|1|R3|G|829
*
9NL6|1|R3|C|857
9NL6|1|R3|G|858
9NL6|1|R3|G|859
9NL6|1|R3|A|860
9NL6|1|R3|G|861
*
9NL6|1|R3|C|868
9NL6|1|R3|G|869
9NL6|1|R3|U|870
9NL6|1|R3|U|871
9NL6|1|R3|A|872
9NL6|1|R3|A|873
9NL6|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21