J3_9NL6_028

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9NL6|1|R3|U|1212, 9NL6|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NL6_028 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1487

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9NL6|1|R3|C|990
9NL6|1|R3|U|991
9NL6|1|R3|U|992
9NL6|1|R3|G|993
9NL6|1|R3|A|994
9NL6|1|R3|C|995
9NL6|1|R3|A|996
9NL6|1|R3|U|997
*
9NL6|1|R3|A|1044
9NL6|1|R3|C|1045
9NL6|1|R3|A|1046
9NL6|1|R3|G|1047
*
9NL6|1|R3|C|1210
9NL6|1|R3|U|1211
9NL6|1|R3|U|1212
9NL6|1|R3|A|1213
9NL6|1|R3|C|1214
9NL6|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14