J3_9NL7_022
3D structure
- PDB id
- 9NL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NL7_022 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.0911
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NL7|1|R3|C|586
9NL7|1|R3|G|587
9NL7|1|R3|G|588
*
9NL7|1|R3|C|651
9NL7|1|R3|U|652
9NL7|1|R3|U|653
9NL7|1|R3|G|654
9NL7|1|R3|A|655
*
9NL7|1|R3|U|751
9NL7|1|R3|G|752
9NL7|1|R3|A|753
9NL7|1|R3|C|754
9NL7|1|R3|G|755
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sh
- 30S ribosomal protein S8
- Chain sl
- Small ribosomal subunit protein uS12
- Chain so
- Small ribosomal subunit protein uS15
- Chain sq
- Small ribosomal subunit protein uS17
Coloring options: