J3_9NLB_013

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLB_013 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1052

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NLB|1|R1|G|1424
9NLB|1|R1|G|1425
9NLB|1|R1|G|1426
9NLB|1|R1|A|1427
9NLB|1|R1|C|1428
9NLB|1|R1|G|1429
*
9NLB|1|R1|C|1564
9NLB|1|R1|C|1565
*
9NLB|1|R1|G|1568
9NLB|1|R1|A|1569
9NLB|1|R1|A|1570
9NLB|1|R1|A|1571
9NLB|1|R1|A|1572
9NLB|1|R1|G|1573
9NLB|1|R1|C|1574

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2