J3_9NLB_025

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NLB|1|R3|U|871, 9NLB|1|R3|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLB_025 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.086

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NLB|1|R3|C|826
9NLB|1|R3|U|827
9NLB|1|R3|U|828
9NLB|1|R3|G|829
*
9NLB|1|R3|C|857
9NLB|1|R3|G|858
9NLB|1|R3|G|859
9NLB|1|R3|A|860
9NLB|1|R3|G|861
*
9NLB|1|R3|C|868
9NLB|1|R3|G|869
9NLB|1|R3|U|870
9NLB|1|R3|U|871
9NLB|1|R3|A|872
9NLB|1|R3|A|873
9NLB|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21