J3_9NLF_010

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9NLF|1|R1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLF_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1241

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9NLF|1|R1|C|1306
9NLF|1|R1|A|1307
9NLF|1|R1|A|1308
9NLF|1|R1|G|1309
*
9NLF|1|R1|C|1605
9NLF|1|R1|C|1606
9NLF|1|R1|C|1607
9NLF|1|R1|A|1608
9NLF|1|R1|A|1609
9NLF|1|R1|A|1610
9NLF|1|R1|C|1611
*
9NLF|1|R1|G|1620
9NLF|1|R1|U|1621
9NLF|1|R1|G|1622

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34