J3_9NLF_024

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NLF|1|R3|U|871, 9NLF|1|R3|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLF_024 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0845

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NLF|1|R3|C|826
9NLF|1|R3|U|827
9NLF|1|R3|U|828
9NLF|1|R3|G|829
*
9NLF|1|R3|C|857
9NLF|1|R3|G|858
9NLF|1|R3|G|859
9NLF|1|R3|A|860
9NLF|1|R3|G|861
*
9NLF|1|R3|C|868
9NLF|1|R3|G|869
9NLF|1|R3|U|870
9NLF|1|R3|U|871
9NLF|1|R3|A|872
9NLF|1|R3|A|873
9NLF|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21