J3_9NLH_002
3D structure
- PDB id
- 9NLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with YheS-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9NLH|1|R1|A|504, 9NLH|1|R1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLH_002 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1289
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NLH|1|R1|G|30
9NLH|1|R1|C|31
*
9NLH|1|R1|G|474
9NLH|1|R1|C|475
9NLH|1|R1|G|476
9NLH|1|R1|A|477
9NLH|1|R1|A|478
9NLH|1|R1|A|479
9NLH|1|R1|A|480
9NLH|1|R1|G|481
9NLH|1|R1|A|482
9NLH|1|R1|A|483
9NLH|1|R1|C|484
*
9NLH|1|R1|G|496
9NLH|1|R1|A|497
9NLH|1|R1|G|498
9NLH|1|R1|U|499
9NLH|1|R1|G|500
9NLH|1|R1|A|501
9NLH|1|R1|A|502
9NLH|1|R1|A|503
9NLH|1|R1|A|504
9NLH|1|R1|A|505
9NLH|1|R1|G|506
9NLH|1|R1|A|507
9NLH|1|R1|A|508
9NLH|1|R1|C|509
9NLH|1|R1|C|510
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 20
- Large ribosomal subunit protein bL20
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 24
- Large ribosomal subunit protein uL24
Coloring options: