J3_9NLJ_025

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NLJ|1|R3|U|871, 9NLJ|1|R3|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLJ_025 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0803

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NLJ|1|R3|C|826
9NLJ|1|R3|U|827
9NLJ|1|R3|U|828
9NLJ|1|R3|G|829
*
9NLJ|1|R3|C|857
9NLJ|1|R3|G|858
9NLJ|1|R3|G|859
9NLJ|1|R3|A|860
9NLJ|1|R3|G|861
*
9NLJ|1|R3|C|868
9NLJ|1|R3|G|869
9NLJ|1|R3|U|870
9NLJ|1|R3|U|871
9NLJ|1|R3|A|872
9NLJ|1|R3|A|873
9NLJ|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21