J3_9NLJ_036

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9NLJ|1|R3|U|1240, 9NLJ|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLJ_036 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.166

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9NLJ|1|R3|C|1237
9NLJ|1|R3|A|1238
9NLJ|1|R3|A|1239
9NLJ|1|R3|U|1240
9NLJ|1|R3|G|1241
*
9NLJ|1|R3|C|1296
9NLJ|1|R3|G|1297
9NLJ|1|R3|U|1298
9NLJ|1|R3|A|1299
9NLJ|1|R3|G|1300
9NLJ|1|R3|U|1301
9NLJ|1|R3|C|1302
9NLJ|1|R3|C|1303
*
9NLJ|1|R3|G|1334
9NLJ|1|R3|U|1335
9NLJ|1|R3|C|1336
9NLJ|1|R3|G|1337

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain U

Uup

Chain sg

30S ribosomal protein S7

Chain sm

30S ribosomal protein S13