J3_9NLQ_009

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9NLQ|1|R1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_009 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1202

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NLQ|1|R1|C|1298
9NLQ|1|R1|G|1299
9NLQ|1|R1|G|1300
9NLQ|1|R1|A|1301
9NLQ|1|R1|A|1302
9NLQ|1|R1|G|1303
*
9NLQ|1|R1|C|1625
9NLQ|1|R1|A|1626
9NLQ|1|R1|G|1627
*
9NLQ|1|R1|C|1639
9NLQ|1|R1|A|1640
9NLQ|1|R1|A|1641
9NLQ|1|R1|G|1642

Current chains

Chain R1

23S ribosomal RNA

Nearby chains