J3_9NLQ_025

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9NLQ|1|R3|U|871, 9NLQ|1|R3|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_025 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0923

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9NLQ|1|R3|C|826
9NLQ|1|R3|U|827
9NLQ|1|R3|U|828
9NLQ|1|R3|G|829
*
9NLQ|1|R3|C|857
9NLQ|1|R3|G|858
9NLQ|1|R3|G|859
9NLQ|1|R3|A|860
9NLQ|1|R3|G|861
*
9NLQ|1|R3|C|868
9NLQ|1|R3|G|869
9NLQ|1|R3|U|870
9NLQ|1|R3|U|871
9NLQ|1|R3|A|872
9NLQ|1|R3|A|873
9NLQ|1|R3|G|874

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain sh

30S ribosomal protein S8

Chain su

Small ribosomal subunit protein bS21