J3_9NLS_010

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9NLS|1|R1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1174

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9NLS|1|R1|C|1306
9NLS|1|R1|A|1307
9NLS|1|R1|A|1308
9NLS|1|R1|G|1309
*
9NLS|1|R1|C|1605
9NLS|1|R1|C|1606
9NLS|1|R1|C|1607
9NLS|1|R1|A|1608
9NLS|1|R1|A|1609
9NLS|1|R1|A|1610
9NLS|1|R1|C|1611
*
9NLS|1|R1|G|1620
9NLS|1|R1|U|1621
9NLS|1|R1|G|1622

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34