J3_9NLS_012

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_012 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0927

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9NLS|1|R1|G|1424
9NLS|1|R1|G|1425
9NLS|1|R1|G|1426
9NLS|1|R1|A|1427
9NLS|1|R1|C|1428
9NLS|1|R1|G|1429
*
9NLS|1|R1|C|1564
9NLS|1|R1|C|1565
*
9NLS|1|R1|G|1568
9NLS|1|R1|A|1569
9NLS|1|R1|A|1570
9NLS|1|R1|A|1571
9NLS|1|R1|A|1572
9NLS|1|R1|G|1573
9NLS|1|R1|C|1574

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2