J3_9NLS_034

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9NLS|1|R3|U|1240, 9NLS|1|R3|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_034 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1836

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

9NLS|1|R3|C|1237
9NLS|1|R3|A|1238
9NLS|1|R3|A|1239
9NLS|1|R3|U|1240
9NLS|1|R3|G|1241
*
9NLS|1|R3|C|1296
9NLS|1|R3|G|1297
9NLS|1|R3|U|1298
9NLS|1|R3|A|1299
9NLS|1|R3|G|1300
9NLS|1|R3|U|1301
9NLS|1|R3|C|1302
9NLS|1|R3|C|1303
*
9NLS|1|R3|G|1334
9NLS|1|R3|U|1335
9NLS|1|R3|C|1336
9NLS|1|R3|G|1337

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain Y

Probable ATP-binding protein YbiT

Chain sg

30S ribosomal protein S7

Chain sm

30S ribosomal protein S13