J3_9NO7_001

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_001 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0788

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9NO7|1|A|G|30
9NO7|1|A|C|31
*
9NO7|1|A|G|474
9NO7|1|A|U|475
9NO7|1|A|G|476
9NO7|1|A|A|477
9NO7|1|A|A|478
9NO7|1|A|A|479
9NO7|1|A|A|480
9NO7|1|A|G|481
*
9NO7|1|A|C|509
9NO7|1|A|C|510

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L20

Chain W

50S ribosomal protein L22

Chain Y

50S ribosomal protein L24