J3_9NO7_005

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

9NO7|1|A|U|272|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_005 not in the Motif Atlas

Geometric match to J3_9DFE_005

Geometric discrepancy: 0.0851

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9NO7|1|A|U|269
9NO7|1|A|A|270
9NO7|1|A|A|271
9NO7|1|A|A|271|||A
9NO7|1|A|C|271|||B
*
9NO7|1|A|G|271|||V
9NO7|1|A|G|271|||W
9NO7|1|A|G|271|||X
9NO7|1|A|U|271|||Y
9NO7|1|A|C|271|||Z
9NO7|1|A|G|272
9NO7|1|A|U|272|||A
9NO7|1|A|G|272|||B
*
9NO7|1|A|C|366
9NO7|1|A|G|370

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L9