J3_9NO7_006

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9NO7|1|A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_006 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0648

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9NO7|1|A|C|297
9NO7|1|A|G|298
9NO7|1|A|A|299
9NO7|1|A|A|300
9NO7|1|A|G|301
*
9NO7|1|A|C|316
9NO7|1|A|G|317
9NO7|1|A|C|318
9NO7|1|A|C|319
9NO7|1|A|A|320
9NO7|1|A|G|321
9NO7|1|A|A|322
9NO7|1|A|G|323
9NO7|1|A|A|324
9NO7|1|A|G|325
*
9NO7|1|A|C|337
9NO7|1|A|G|338
9NO7|1|A|U|339
9NO7|1|A|A|340
9NO7|1|A|G|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24