J3_9NO7_012

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_012 not in the Motif Atlas

Geometric match to J3_7A0S_019

Geometric discrepancy: 0.074

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9NO7|1|A|G|1424
9NO7|1|A|G|1425
9NO7|1|A|G|1426
9NO7|1|A|A|1427
9NO7|1|A|C|1428
9NO7|1|A|G|1429
*
9NO7|1|A|C|1564
9NO7|1|A|C|1565
*
9NO7|1|A|G|1568
9NO7|1|A|A|1569
9NO7|1|A|A|1570
9NO7|1|A|A|1571
9NO7|1|A|A|1572
9NO7|1|A|G|1573
9NO7|1|A|C|1574

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2