J3_9NO7_013

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9NO7|1|A|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_013 not in the Motif Atlas

Geometric match to J3_9DFE_014

Geometric discrepancy: 0.0671

The information below is about J3_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NO7|1|A|U|2091
9NO7|1|A|U|2092
9NO7|1|A|G|2093
*
9NO7|1|A|C|2196
9NO7|1|A|U|2197
9NO7|1|A|A|2198
9NO7|1|A|A|2199
9NO7|1|A|C|2200
*
9NO7|1|A|G|2223
9NO7|1|A|G|2224
9NO7|1|A|A|2225
9NO7|1|A|C|2226
9NO7|1|A|A|2227
9NO7|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

50S ribosomal protein L2

Chain I

50S ribosomal protein L9