J3_9NO7_014
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9NO7|1|A|A|2388, 9NO7|1|A|U|2390, 9NO7|1|A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NO7_014 not in the Motif Atlas
- Geometric match to J3_9DFE_015
- Geometric discrepancy: 0.0884
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9NO7|1|A|G|2282
9NO7|1|A|C|2283
9NO7|1|A|C|2284
*
9NO7|1|A|G|2384
9NO7|1|A|C|2385
9NO7|1|A|C|2386
9NO7|1|A|U|2387
9NO7|1|A|A|2388
9NO7|1|A|G|2389
9NO7|1|A|U|2390
9NO7|1|A|G|2391
9NO7|1|A|A|2392
9NO7|1|A|A|2393
9NO7|1|A|C|2394
9NO7|1|A|C|2395
*
9NO7|1|A|G|2421
9NO7|1|A|A|2422
9NO7|1|A|U|2423
9NO7|1|A|C|2424
9NO7|1|A|A|2425
9NO7|1|A|A|2426
9NO7|1|A|C|2427
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain 1
- 50S ribosomal protein L28
- Chain 6
- 50S ribosomal protein L33
- Chain 8
- 50S ribosomal protein L35
- Chain P
- 50S ribosomal protein L15
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