J3_9NO7_015
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 9NO7|1|A|G|2334, 9NO7|1|A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NO7_015 not in the Motif Atlas
- Geometric match to J3_9DFE_016
- Geometric discrepancy: 0.0914
- The information below is about J3_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9NO7|1|A|C|2295
9NO7|1|A|U|2296
9NO7|1|A|C|2297
*
9NO7|1|A|G|2321
9NO7|1|A|A|2322
9NO7|1|A|G|2323
*
9NO7|1|A|U|2332
9NO7|1|A|A|2333
9NO7|1|A|G|2334
9NO7|1|A|A|2335
9NO7|1|A|A|2336
9NO7|1|A|G|2337
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 50S ribosomal protein L5
- Chain S
- 50S ribosomal protein L18
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