J3_9NO7_019

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

9NO7|1|B|U|14, 9NO7|1|B|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_019 not in the Motif Atlas

Geometric match to J3_9DFE_020

Geometric discrepancy: 0.0794

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

9NO7|1|B|C|11
9NO7|1|B|C|12
9NO7|1|B|A|13
9NO7|1|B|U|14
9NO7|1|B|A|15
9NO7|1|B|G|16
*
9NO7|1|B|C|68
9NO7|1|B|G|69
*
9NO7|1|B|U|108
9NO7|1|B|C|109
9NO7|1|B|G|110

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Z

50S ribosomal protein L25