J3_9NPY_002
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NPY_002 not in the Motif Atlas
- Geometric match to J3_8CRE_079
- Geometric discrepancy: 0.0654
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NPY|1|i|U|1225
9NPY|1|i|G|1226
9NPY|1|i|G|1227
9NPY|1|i|A|1228
*
9NPY|1|i|U|1530
9NPY|1|i|A|1531
9NPY|1|i|C|1532
*
9NPY|1|i|G|1638
9NPY|1|i|G7M|1639
9NPY|1|i|A|1640
9NPY|1|i|A|1641
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS7, RPS5
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain S
- 40S ribosomal protein uS13, RPS18
- Chain T
- 40S ribosomal protein eS19, RPS19
Coloring options: