J3_9NPY_003
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9NPY|1|i|G|1256, 9NPY|1|i|A|1258, 9NPY|1|i|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NPY_003 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.0585
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9NPY|1|i|C|1237
9NPY|1|i|PSU|1238
9NPY|1|i|U|1239
9NPY|1|i|A|1240
9NPY|1|i|A|1241
9NPY|1|i|U|1242
9NPY|1|i|U|1243
9NPY|1|i|PSU|1244
*
9NPY|1|i|G|1255
9NPY|1|i|G|1256
9NPY|1|i|G|1257
9NPY|1|i|A|1258
9NPY|1|i|A|1259
9NPY|1|i|A|1260
9NPY|1|i|C|1261
9NPY|1|i|C|1262
9NPY|1|i|U|1263
9NPY|1|i|C|1264
9NPY|1|i|A|1265
9NPY|1|i|C|1266
*
9NPY|1|i|G|1516
9NPY|1|i|G|1517
9NPY|1|i|C|1518
9NPY|1|i|U|1519
9NPY|1|i|G|1520
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain O
- 40S ribosomal protein uS19, RPS15
- Chain S
- 40S ribosomal protein uS13, RPS18
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: