J3_9NPY_004
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (OMC)CGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9NPY|1|i|G|1274, 9NPY|1|i|G|1507, 9NPY|1|i|U|1509
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NPY_004 not in the Motif Atlas
- Geometric match to J3_8CRE_081
- Geometric discrepancy: 0.0865
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9NPY|1|i|OMC|1272
9NPY|1|i|C|1273
9NPY|1|i|G|1274
9NPY|1|i|G|1275
9NPY|1|i|A|1276
9NPY|1|i|C|1277
*
9NPY|1|i|G|1320
9NPY|1|i|G|1321
9NPY|1|i|G|1322
9NPY|1|i|U|1323
9NPY|1|i|G|1324
*
9NPY|1|i|U|1504
9NPY|1|i|U|1505
9NPY|1|i|A|1506
9NPY|1|i|G|1507
9NPY|1|i|A|1508
9NPY|1|i|U|1509
9NPY|1|i|G|1510
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein eS10, RPS10
- Chain b
- 40S ribosomal protein eS31, RPS27a
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: