J3_9O3H_003

3D structure

PDB id

9O3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9O3H|1|1A|U|448, 9O3H|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3H_003 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.0536

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

9O3H|1|1A|C|32
9O3H|1|1A|U|33
9O3H|1|1A|C|34
9O3H|1|1A|G|35
*
9O3H|1|1A|C|445
9O3H|1|1A|G|446
9O3H|1|1A|A|447
9O3H|1|1A|U|448
9O3H|1|1A|A|449
9O3H|1|1A|G|450
9O3H|1|1A|C|451
9O3H|1|1A|G|452
9O3H|1|1A|C|453
9O3H|1|1A|A|454
9O3H|1|1A|C|455
9O3H|1|1A|C|456
9O3H|1|1A|A|457
9O3H|1|1A|G|458
9O3H|1|1A|U|459
9O3H|1|1A|A|460
9O3H|1|1A|C|461
*
9O3H|1|1A|G|468
9O3H|1|1A|G|469
9O3H|1|1A|A|470
9O3H|1|1A|A|471
9O3H|1|1A|A|472
9O3H|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23