J3_9O3J_039

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

9O3J|1|2A|U|504, 9O3J|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_039 not in the Motif Atlas

Geometric match to J3_9DFE_002

Geometric discrepancy: 0.0524

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9O3J|1|2A|G|30
9O3J|1|2A|C|31
*
9O3J|1|2A|G|474
9O3J|1|2A|U|475
9O3J|1|2A|G|476
9O3J|1|2A|A|477
9O3J|1|2A|A|478
9O3J|1|2A|A|479
9O3J|1|2A|A|480
9O3J|1|2A|G|481
9O3J|1|2A|A|482
9O3J|1|2A|A|483
9O3J|1|2A|C|484
*
9O3J|1|2A|G|496
9O3J|1|2A|A|497
9O3J|1|2A|G|498
9O3J|1|2A|U|499
9O3J|1|2A|G|500
9O3J|1|2A|A|501
9O3J|1|2A|A|502
9O3J|1|2A|A|503
9O3J|1|2A|U|504
9O3J|1|2A|A|505
9O3J|1|2A|G|506
9O3J|1|2A|A|507
9O3J|1|2A|G|508
9O3J|1|2A|C|509
9O3J|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24