J3_9OFV_007
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 9OFV|1|f|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_007 not in the Motif Atlas
- Geometric match to J3_8P9A_048
- Geometric discrepancy: 0.0669
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9OFV|1|f|U|502
9OFV|1|f|C|503
*
9OFV|1|f|G|588
9OFV|1|f|A|589
9OFV|1|f|G|590
9OFV|1|f|G|591
9OFV|1|f|A|592
9OFV|1|f|C|593
9OFV|1|f|U|594
9OFV|1|f|G|595
9OFV|1|f|C|596
9OFV|1|f|G|597
*
9OFV|1|f|C|606
9OFV|1|f|A|607
9OFV|1|f|A|608
9OFV|1|f|G|609
9OFV|1|f|G|610
9OFV|1|f|A|611
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain R
- Large ribosomal subunit protein eL32
- Chain l
- Large ribosomal subunit protein uL4A
- Chain n
- Large ribosomal subunit protein eL6B
- Chain o
- 60S ribosomal protein L7-A
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