J3_9OFV_009
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 9OFV|1|f|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_009 not in the Motif Atlas
- Geometric match to J3_8P9A_050
- Geometric discrepancy: 0.0926
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9OFV|1|f|A|828
9OFV|1|f|U|829
9OFV|1|f|A|830
9OFV|1|f|G|831
*
9OFV|1|f|C|863
9OFV|1|f|G|864
9OFV|1|f|U|865
9OFV|1|f|A|866
9OFV|1|f|G|867
*
9OFV|1|f|U|892
9OFV|1|f|C|893
9OFV|1|f|G|894
9OFV|1|f|A|895
9OFV|1|f|A|896
9OFV|1|f|U|897
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 5
- 60S ribosomal protein L19-A
- Chain T
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L2-A
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