J3_9OFV_010
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 9OFV|1|f|A|1065, 9OFV|1|f|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_010 not in the Motif Atlas
- Geometric match to J3_8CRE_011
- Geometric discrepancy: 0.2554
- The information below is about J3_8CRE_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9OFV|1|f|U|986
9OFV|1|f|U|987
*
9OFV|1|f|A|1062
9OFV|1|f|G|1063
9OFV|1|f|A|1064
9OFV|1|f|A|1065
9OFV|1|f|G|1066
*
9OFV|1|f|C|1092
9OFV|1|f|A|1093
9OFV|1|f|U|1094
9OFV|1|f|U|1095
9OFV|1|f|U|1096
9OFV|1|f|G|1097
9OFV|1|f|A|1098
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 7
- 60S ribosomal protein L21-A
- Chain O
- Large ribosomal subunit protein eL29
- Chain o
- 60S ribosomal protein L7-A
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