J3_9OFV_011

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OFV_011 not in the Motif Atlas

Geometric match to J3_8P9A_052

Geometric discrepancy: 0.1221

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9OFV|1|f|G|1230
9OFV|1|f|A|1231
9OFV|1|f|C|1232
*
9OFV|1|f|G|1256
9OFV|1|f|C|1257
9OFV|1|f|U|1258
9OFV|1|f|A|1259
9OFV|1|f|A|1260
9OFV|1|f|G|1261
9OFV|1|f|G|1262
*
9OFV|1|f|C|1277
9OFV|1|f|A|1278
9OFV|1|f|C|1279

Current chains

Chain f

25S rRNA

Nearby chains

Chain 0

60S acidic ribosomal protein P0

Chain z

Large ribosomal subunit protein uL11A