J3_9OFV_013
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9OFV|1|f|U|1840, 9OFV|1|f|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_013 not in the Motif Atlas
- Geometric match to J3_8P9A_054
- Geometric discrepancy: 0.0684
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9OFV|1|f|G|1488
9OFV|1|f|A|1489
9OFV|1|f|A|1490
9OFV|1|f|A|1491
*
9OFV|1|f|U|1837
9OFV|1|f|G|1838
9OFV|1|f|A|1839
9OFV|1|f|U|1840
9OFV|1|f|A|1841
9OFV|1|f|A|1842
9OFV|1|f|C|1843
*
9OFV|1|f|G|1852
9OFV|1|f|U|1853
9OFV|1|f|C|1854
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L34-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
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