J3_9OFV_016

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9OFV_016 not in the Motif Atlas

Geometric match to J3_8P9A_087

Geometric discrepancy: 0.1557

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9OFV|1|f|C|1631
9OFV|1|f|A|1632
*
9OFV|1|f|U|1641
9OFV|1|f|A|1642
9OFV|1|f|A|1643
9OFV|1|f|C|1644
9OFV|1|f|U|1645
*
9OFV|1|f|A|1810
9OFV|1|f|G|1811

Current chains

Chain f

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L27-A

Chain T

60S ribosomal protein L34-A

Chain X

Large ribosomal subunit protein eL38

Chain d

60S ribosomal protein L41-A